J3_5KPV_023

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUAAU*AGGUUAG*CAUAAG

Length

18 nucleotides

Bulged bases

5KPV|1|27|U|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPV|1|27|C|2295
5KPV|1|27|U|2296
5KPV|1|27|A|2297
5KPV|1|27|A|2298
5KPV|1|27|U|2299
*
5KPV|1|27|A|2317
5KPV|1|27|G|2318
5KPV|1|27|G|2319
5KPV|1|27|U|2320
5KPV|1|27|U|2321
5KPV|1|27|A|2322
5KPV|1|27|G|2323
*
5KPV|1|27|C|2332
5KPV|1|27|A|2333
5KPV|1|27|U|2334
5KPV|1|27|A|2335
5KPV|1|27|A|2336
5KPV|1|27|G|2337

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 28

5S ribosomal RNA; 5S rRNA

Chain 31

Transfer RNA; tRNA

Chain D

50S ribosomal protein L5

Chain N

50S ribosomal protein L18

Chain V

50S ribosomal protein L27