J3_5KPW_001

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_001 not in the Motif Atlas

Homologous match to J3_5J7L_001

Geometric discrepancy: 0.1185

The information below is about J3_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPW|1|26|G|46
5KPW|1|26|C|47
*
5KPW|1|26|G|361
5KPW|1|26|G|362
5KPW|1|26|A|363
5KPW|1|26|A|364
5KPW|1|26|U|365
5KPW|1|26|A|366
5KPW|1|26|U|367
*
5KPW|1|26|A|393
5KPW|1|26|G|394
5KPW|1|26|C|395

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 20

30S ribosomal protein S16

Chain 33

GTP pyrophosphokinase