J3_5KPW_002

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_002 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.1264

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5KPW|1|26|C|586
5KPW|1|26|G|587
5KPW|1|26|G|588
*
5KPW|1|26|C|651
5KPW|1|26|U|652
5KPW|1|26|U|653
5KPW|1|26|G|654
*
5KPW|1|26|C|754
5KPW|1|26|G|755

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S8

Chain 16

30S ribosomal protein S12

Chain 19

30S ribosomal protein S15

Chain 21

30S ribosomal protein S17