J3_5KPW_005

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_005 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1111

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.4

Basepair signature

cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW

Number of instances in this motif group

4

Unit IDs

5KPW|1|26|C|936
5KPW|1|26|A|937
5KPW|1|26|A|938
5KPW|1|26|G|939
*
5KPW|1|26|C|1344
5KPW|1|26|U|1345
5KPW|1|26|A|1346
5KPW|1|26|G|1347
5KPW|1|26|U|1348
5KPW|1|26|A|1349
5KPW|1|26|A|1350
*
5KPW|1|26|U|1372
5KPW|1|26|G|1373
5KPW|1|26|A|1374
5KPW|1|26|A|1375
5KPW|1|26|U|1376
5KPW|1|26|A|1377
5KPW|1|26|C|1378
5KPW|1|26|G|1379

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 11

30S ribosomal protein S7

Chain 13

30S ribosomal protein S9

Chain 32

Transfer RNA; tRNA