J3_5KPW_015

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

5KPW|1|27|U|686, 5KPW|1|27|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_015 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1122

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|U|683
5KPW|1|27|G|684
5KPW|1|27|A|685
5KPW|1|27|U|686
5KPW|1|27|C|687
5KPW|1|27|U|688
5KPW|1|27|A|689
*
5KPW|1|27|U|773
5KPW|1|27|G|774
5KPW|1|27|G|775
*
5KPW|1|27|C|791
5KPW|1|27|A|792
5KPW|1|27|A|793
5KPW|1|27|A|794

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain A

50S ribosomal protein L2