J3_5KPW_016

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_016 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0998

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

5KPW|1|27|C|698
5KPW|1|27|A|699
5KPW|1|27|G|700
*
5KPW|1|27|C|732
5KPW|1|27|G|733
5KPW|1|27|A|734
5KPW|1|27|A|735
5KPW|1|27|C|736
*
5KPW|1|27|G|760
5KPW|1|27|A|761
5KPW|1|27|U|762
5KPW|1|27|G|763

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2