J3_5KPW_023

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

5KPW|1|27|A|2518, 5KPW|1|27|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_023 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.132

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

5KPW|1|27|C|2517
5KPW|1|27|A|2518
5KPW|1|27|U|2519
5KPW|1|27|C|2520
*
5KPW|1|27|G|2545
5KPW|1|27|U|2546
5KPW|1|27|A|2547
*
5KPW|1|27|U|2561
5KPW|1|27|U|2562
5KPW|1|27|U|2563
5KPW|1|27|A|2564
5KPW|1|27|A|2565
5KPW|1|27|A|2566
5KPW|1|27|G|2567

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L14