J3_5KPW_029

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

5KPW|1|26|U|1212, 5KPW|1|26|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_029 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1417

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5KPW|1|26|C|990
5KPW|1|26|U|991
5KPW|1|26|U|992
5KPW|1|26|G|993
5KPW|1|26|A|994
5KPW|1|26|C|995
5KPW|1|26|A|996
5KPW|1|26|U|997
*
5KPW|1|26|A|1044
5KPW|1|26|C|1045
5KPW|1|26|A|1046
5KPW|1|26|G|1047
*
5KPW|1|26|C|1210
5KPW|1|26|U|1211
5KPW|1|26|U|1212
5KPW|1|26|A|1213
5KPW|1|26|C|1214
5KPW|1|26|G|1215

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 18

30S ribosomal protein S14