J3_5KPW_037

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5KPW|1|27|U|321, 5KPW|1|27|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPW_037 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1444

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPW|1|27|G|297
5KPW|1|27|G|298
5KPW|1|27|A|299
5KPW|1|27|A|300
5KPW|1|27|G|301
*
5KPW|1|27|C|316
5KPW|1|27|G|317
5KPW|1|27|C|318
5KPW|1|27|G|319
5KPW|1|27|A|320
5KPW|1|27|U|321
5KPW|1|27|A|322
5KPW|1|27|C|323
5KPW|1|27|A|324
5KPW|1|27|G|325
*
5KPW|1|27|C|337
5KPW|1|27|G|338
5KPW|1|27|U|339
5KPW|1|27|A|340
5KPW|1|27|C|341

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain T

50S ribosomal protein L24