J3_5KPX_031
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAU*AGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5KPX|1|26|U|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5KPX_031 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1392
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5KPX|1|26|U|1116
5KPX|1|26|A|1117
5KPX|1|26|U|1118
*
5KPX|1|26|A|1155
5KPX|1|26|G|1156
5KPX|1|26|A|1157
5KPX|1|26|C|1158
5KPX|1|26|U|1159
5KPX|1|26|G|1160
5KPX|1|26|C|1161
*
5KPX|1|26|G|1175
5KPX|1|26|A|1176
5KPX|1|26|G|1177
5KPX|1|26|G|1178
5KPX|1|26|A|1179
5KPX|1|26|A|1180
5KPX|1|26|G|1181
5KPX|1|26|G|1182
5KPX|1|26|U|1183
5KPX|1|26|G|1184
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 11
- 30S ribosomal protein S7
- Chain 13
- 30S ribosomal protein S9
- Chain 14
- 30S ribosomal protein S10
- Chain 18
- 30S ribosomal protein S14
- Chain 6
- 30S ribosomal protein S2
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