J3_5KPX_034

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5KPX|1|27|U|321, 5KPX|1|27|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5KPX_034 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1455

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5KPX|1|27|G|297
5KPX|1|27|G|298
5KPX|1|27|A|299
5KPX|1|27|A|300
5KPX|1|27|G|301
*
5KPX|1|27|C|316
5KPX|1|27|G|317
5KPX|1|27|C|318
5KPX|1|27|G|319
5KPX|1|27|A|320
5KPX|1|27|U|321
5KPX|1|27|A|322
5KPX|1|27|C|323
5KPX|1|27|A|324
5KPX|1|27|G|325
*
5KPX|1|27|C|337
5KPX|1|27|G|338
5KPX|1|27|U|339
5KPX|1|27|A|340
5KPX|1|27|C|341

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain T

50S ribosomal protein L24