J3_5LI0_006

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_006 not in the Motif Atlas

Homologous match to J3_4WF9_004

Geometric discrepancy: 0.1533

The information below is about J3_4WF9_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5LI0|1|A|C|1335
5LI0|1|A|G|1336
5LI0|1|A|A|1337
5LI0|1|A|U|1338
5LI0|1|A|U|1339
5LI0|1|A|G|1340
*
5LI0|1|A|C|1669
5LI0|1|A|A|1670
5LI0|1|A|A|1671
*
5LI0|1|A|U|1683
5LI0|1|A|A|1684
5LI0|1|A|A|1685
5LI0|1|A|G|1686

Current chains

Chain A

23S ribosomal RNA

Nearby chains