3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GC*GGAAUCU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LI0_014 not in the Motif Atlas
Homologous match to J3_6CZR_015
Geometric discrepancy: 0.1845
The information below is about J3_6CZR_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.3
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5LI0|1|a|G|47
5LI0|1|a|C|48
*
5LI0|1|a|G|369
5LI0|1|a|G|370
5LI0|1|a|A|371
5LI0|1|a|A|372
5LI0|1|a|U|373
5LI0|1|a|C|374
5LI0|1|a|U|375
*
5LI0|1|a|A|401
5LI0|1|a|G|402
5LI0|1|a|C|403

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain l
30S ribosomal protein S12
Chain p
30S ribosomal protein S16

Coloring options:


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