J3_5LI0_027
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AC*GAUAUGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 5LI0|1|A|U|72, 5LI0|1|A|U|74
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_027 not in the Motif Atlas
- Homologous match to J3_4WF9_013
- Geometric discrepancy: 0.1834
- The information below is about J3_4WF9_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_35667.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
5LI0|1|A|A|56
5LI0|1|A|C|57
*
5LI0|1|A|G|70
5LI0|1|A|A|71
5LI0|1|A|U|72
5LI0|1|A|A|73
5LI0|1|A|U|74
5LI0|1|A|G|75
5LI0|1|A|C|76
*
5LI0|1|A|G|109
5LI0|1|A|A|110
5LI0|1|A|U|111
5LI0|1|A|U|112
5LI0|1|A|U|113
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L29
- Chain 6
- 50S ribosomal protein L34
- Chain W
- 50S ribosomal protein L23
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