J3_5LI0_028

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAAAC*GGGUUGUAG*CUG

Length

17 nucleotides

Bulged bases

5LI0|1|A|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_028 not in the Motif Atlas

Homologous match to J3_4WF9_014

Geometric discrepancy: 0.2095

The information below is about J3_4WF9_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|A|C|272
5LI0|1|A|A|273
5LI0|1|A|A|274
5LI0|1|A|A|275
5LI0|1|A|C|276
*
5LI0|1|A|G|295
5LI0|1|A|G|296
5LI0|1|A|G|297
5LI0|1|A|U|298
5LI0|1|A|U|299
5LI0|1|A|G|300
5LI0|1|A|U|301
5LI0|1|A|A|302
5LI0|1|A|G|303
*
5LI0|1|A|C|414
5LI0|1|A|U|415
5LI0|1|A|G|416

Current chains

Chain A

23S ribosomal RNA

Nearby chains