J3_5LI0_030
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_030 not in the Motif Atlas
- Homologous match to J3_4WF9_017
- Geometric discrepancy: 0.1317
- The information below is about J3_4WF9_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
5LI0|1|A|G|1468
5LI0|1|A|G|1469
5LI0|1|A|G|1470
5LI0|1|A|A|1471
5LI0|1|A|C|1472
5LI0|1|A|G|1473
*
5LI0|1|A|C|1611
5LI0|1|A|C|1612
*
5LI0|1|A|G|1615
5LI0|1|A|A|1616
5LI0|1|A|A|1617
5LI0|1|A|A|1618
5LI0|1|A|A|1619
5LI0|1|A|G|1620
5LI0|1|A|C|1621
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain D
- 50S ribosomal protein L2
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