3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGGACG*CC*GAAAAGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LI0_030 not in the Motif Atlas
Homologous match to J3_4WF9_017
Geometric discrepancy: 0.1317
The information below is about J3_4WF9_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_34864.2
Basepair signature
cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
Number of instances in this motif group
4

Unit IDs

5LI0|1|A|G|1468
5LI0|1|A|G|1469
5LI0|1|A|G|1470
5LI0|1|A|A|1471
5LI0|1|A|C|1472
5LI0|1|A|G|1473
*
5LI0|1|A|C|1611
5LI0|1|A|C|1612
*
5LI0|1|A|G|1615
5LI0|1|A|A|1616
5LI0|1|A|A|1617
5LI0|1|A|A|1618
5LI0|1|A|A|1619
5LI0|1|A|G|1620
5LI0|1|A|C|1621

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L2

Coloring options:


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