3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGG*CUUGAGUGC*GUAACUGACG
Length
22 nucleotides
Bulged bases
5LI0|1|a|U|661, 5LI0|1|a|U|759
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LI0|1|a|C|594
5LI0|1|a|G|595
5LI0|1|a|G|596
*
5LI0|1|a|C|659
5LI0|1|a|U|660
5LI0|1|a|U|661
5LI0|1|a|G|662
5LI0|1|a|A|663
5LI0|1|a|G|664
5LI0|1|a|U|665
5LI0|1|a|G|666
5LI0|1|a|C|667
*
5LI0|1|a|G|754
5LI0|1|a|U|755
5LI0|1|a|A|756
5LI0|1|a|A|757
5LI0|1|a|C|758
5LI0|1|a|U|759
5LI0|1|a|G|760
5LI0|1|a|A|761
5LI0|1|a|C|762
5LI0|1|a|G|763

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain h
30S ribosomal protein S8
Chain l
30S ribosomal protein S12
Chain o
30S ribosomal protein S15
Chain q
30S ribosomal protein S17

Coloring options:

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