J3_5LI0_038

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

5LI0|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LI0_038 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.2128

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

5LI0|1|a|C|1000
5LI0|1|a|U|1001
5LI0|1|a|U|1002
5LI0|1|a|G|1003
5LI0|1|a|A|1004
5LI0|1|a|C|1005
5LI0|1|a|A|1006
5LI0|1|a|U|1007
*
5LI0|1|a|A|1056
5LI0|1|a|C|1057
5LI0|1|a|A|1058
5LI0|1|a|G|1059
*
5LI0|1|a|C|1221
5LI0|1|a|U|1222
5LI0|1|a|U|1223
5LI0|1|a|A|1224
5LI0|1|a|U|1225
5LI0|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z