J3_5LI0_038
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUUGACAU*ACAG*CUUAUG
- Length
- 18 nucleotides
- Bulged bases
- 5LI0|1|a|U|1225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_038 not in the Motif Atlas
- Homologous match to J3_5J7L_053
- Geometric discrepancy: 0.2128
- The information below is about J3_5J7L_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76475.2
- Basepair signature
- cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LI0|1|a|C|1000
5LI0|1|a|U|1001
5LI0|1|a|U|1002
5LI0|1|a|G|1003
5LI0|1|a|A|1004
5LI0|1|a|C|1005
5LI0|1|a|A|1006
5LI0|1|a|U|1007
*
5LI0|1|a|A|1056
5LI0|1|a|C|1057
5LI0|1|a|A|1058
5LI0|1|a|G|1059
*
5LI0|1|a|C|1221
5LI0|1|a|U|1222
5LI0|1|a|U|1223
5LI0|1|a|A|1224
5LI0|1|a|U|1225
5LI0|1|a|G|1226
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain n
- 30S ribosomal protein S14 type Z
Coloring options: