J3_5LI0_040
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 5LI0|1|a|U|1170, 5LI0|1|a|U|1194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LI0_040 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.2245
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LI0|1|a|U|1128
5LI0|1|a|A|1129
5LI0|1|a|A|1130
*
5LI0|1|a|U|1166
5LI0|1|a|G|1167
5LI0|1|a|A|1168
5LI0|1|a|C|1169
5LI0|1|a|U|1170
5LI0|1|a|G|1171
5LI0|1|a|C|1172
*
5LI0|1|a|G|1186
5LI0|1|a|A|1187
5LI0|1|a|G|1188
5LI0|1|a|G|1189
5LI0|1|a|A|1190
5LI0|1|a|A|1191
5LI0|1|a|G|1192
5LI0|1|a|G|1193
5LI0|1|a|U|1194
5LI0|1|a|G|1195
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S9
- Chain j
- 30S ribosomal protein S10
- Chain n
- 30S ribosomal protein S14 type Z
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