J3_5LI0_043

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUGACAAC*GCCUUCC*GGACAAA

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LI0|1|a|U|1010
5LI0|1|a|U|1011
5LI0|1|a|U|1012
5LI0|1|a|G|1013
5LI0|1|a|A|1014
5LI0|1|a|C|1015
5LI0|1|a|A|1016
5LI0|1|a|A|1017
5LI0|1|a|C|1018
*
5LI0|1|a|G|1031
5LI0|1|a|C|1032
5LI0|1|a|C|1033
5LI0|1|a|U|1034
5LI0|1|a|U|1035
5LI0|1|a|C|1036
5LI0|1|a|C|1037
*
5LI0|1|a|G|1046
5LI0|1|a|G|1047
5LI0|1|a|A|1048
5LI0|1|a|C|1049
5LI0|1|a|A|1050
5LI0|1|a|A|1051
5LI0|1|a|A|1052

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain c

30S ribosomal protein S3

Chain n

30S ribosomal protein S14 type Z