J3_5LL6_006

3D structure

PDB id

5LL6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGAUAAAAAAUCAAUG*CUCUUUG*CAU

Length

26 nucleotides

Bulged bases

5LL6|1|2|U|227, 5LL6|1|2|U|238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LL6|1|2|A|213
5LL6|1|2|G|214
5LL6|1|2|A|215
5LL6|1|2|U|216
5LL6|1|2|A|217
5LL6|1|2|A|218
5LL6|1|2|A|219
5LL6|1|2|A|220
5LL6|1|2|A|221
5LL6|1|2|A|222
5LL6|1|2|U|223
5LL6|1|2|C|224
5LL6|1|2|A|225
5LL6|1|2|A|226
5LL6|1|2|U|227
5LL6|1|2|G|228
*
5LL6|1|2|C|237
5LL6|1|2|U|238
5LL6|1|2|C|239
5LL6|1|2|U|240
5LL6|1|2|U|241
5LL6|1|2|U|242
5LL6|1|2|G|243
*
5LL6|1|2|C|250
5LL6|1|2|A|251
5LL6|1|2|U|252

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A