J3_5LMP_009

3D structure

PDB id

5LMP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA translation pre-initiation complex (state-1C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.35 Å

Loop

Sequence

GGGAAC*GGUGC*GAGCCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMP|1|A|G|1001|||A
5LMP|1|A|G|1002
5LMP|1|A|G|1003
5LMP|1|A|A|1004
5LMP|1|A|A|1005
5LMP|1|A|C|1006
*
5LMP|1|A|G|1023
5LMP|1|A|G|1024
5LMP|1|A|U|1025
5LMP|1|A|G|1026
5LMP|1|A|C|1027
*
5LMP|1|A|G|1034
5LMP|1|A|A|1035
5LMP|1|A|G|1036
5LMP|1|A|C|1037
5LMP|1|A|C|1038
5LMP|1|A|C|1039

Current chains

Chain A

16S rRNA

Nearby chains