J3_5LMQ_009

3D structure

PDB id

5LMQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex, open form (state-2A)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGGAACCC*GGGGUGC*GAGCCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMQ|1|A|G|1001|||A
5LMQ|1|A|G|1002
5LMQ|1|A|G|1003
5LMQ|1|A|A|1004
5LMQ|1|A|A|1005
5LMQ|1|A|C|1006
5LMQ|1|A|C|1007
5LMQ|1|A|C|1008
*
5LMQ|1|A|G|1021
5LMQ|1|A|G|1022
5LMQ|1|A|G|1023
5LMQ|1|A|G|1024
5LMQ|1|A|U|1025
5LMQ|1|A|G|1026
5LMQ|1|A|C|1027
*
5LMQ|1|A|G|1034
5LMQ|1|A|A|1035
5LMQ|1|A|G|1036
5LMQ|1|A|C|1037
5LMQ|1|A|C|1038
5LMQ|1|A|C|1039

Current chains

Chain A

16S rRNA

Nearby chains