J3_5LMR_007

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

UUUAAUUC*GAAGAACCUUAC*GGCGA

Length

25 nucleotides

Bulged bases

5LMR|1|A|A|975, 5LMR|1|A|G|976, 5LMR|1|A|A|978

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMR_007 not in the Motif Atlas

Homologous match to J3_4LFB_004

Geometric discrepancy: 0.1906

The information below is about J3_4LFB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_83516.4

Basepair signature

cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5LMR|1|A|U|955
5LMR|1|A|U|956
5LMR|1|A|U|957
5LMR|1|A|A|958
5LMR|1|A|A|959
5LMR|1|A|U|960
5LMR|1|A|U|961
5LMR|1|A|C|962
*
5LMR|1|A|G|973
5LMR|1|A|A|974
5LMR|1|A|A|975
5LMR|1|A|G|976
5LMR|1|A|A|977
5LMR|1|A|A|978
5LMR|1|A|C|979
5LMR|1|A|C|980
5LMR|1|A|U|981
5LMR|1|A|U|982
5LMR|1|A|A|983
5LMR|1|A|C|984
*
5LMR|1|A|G|1221
5LMR|1|A|G|1222
5LMR|1|A|C|1223
5LMR|1|A|G|1224
5LMR|1|A|A|1225

Current chains

Chain A

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S10

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14 type Z

Chain S

30S ribosomal protein S19