J3_5LMR_015

3D structure

PDB id

5LMR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2B)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.45 Å

Loop

Sequence

GCCUAAG*UAGGAAUCUUC*GAGC

Length

22 nucleotides

Bulged bases

5LMR|1|A|C|48, 5LMR|1|A|A|51, 5LMR|1|A|U|368

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMR|1|A|G|46
5LMR|1|A|C|47
5LMR|1|A|C|48
5LMR|1|A|U|49
5LMR|1|A|A|50
5LMR|1|A|A|51
5LMR|1|A|G|52
*
5LMR|1|A|U|359
5LMR|1|A|A|360
5LMR|1|A|G|361
5LMR|1|A|G|362
5LMR|1|A|A|363
5LMR|1|A|A|364
5LMR|1|A|U|365
5LMR|1|A|C|366
5LMR|1|A|U|367
5LMR|1|A|U|368
5LMR|1|A|C|369
*
5LMR|1|A|G|392
5LMR|1|A|A|393
5LMR|1|A|G|394
5LMR|1|A|C|395

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16