J3_5LMS_005

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

CAAGC*GCUAGUAA*UGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMS|1|A|C|936
5LMS|1|A|A|937
5LMS|1|A|A|938
5LMS|1|A|G|939
5LMS|1|A|C|940
*
5LMS|1|A|G|1343
5LMS|1|A|C|1344
5LMS|1|A|U|1345
5LMS|1|A|A|1346
5LMS|1|A|G|1347
5LMS|1|A|U|1348
5LMS|1|A|A|1349
5LMS|1|A|A|1350
*
5LMS|1|A|U|1372
5LMS|1|A|G|1373
5LMS|1|A|A|1374
5LMS|1|A|A|1375
5LMS|1|A|U|1376
5LMS|1|A|A|1377
5LMS|1|A|C|1378
5LMS|1|A|G|1379

Current chains

Chain A

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9