J3_5LMS_009

3D structure

PDB id

5LMS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.1 Å

Loop

Sequence

GGGAACCC*GGGGUGC*GAGCCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMS|1|A|G|1001|||A
5LMS|1|A|G|1002
5LMS|1|A|G|1003
5LMS|1|A|A|1004
5LMS|1|A|A|1005
5LMS|1|A|C|1006
5LMS|1|A|C|1007
5LMS|1|A|C|1008
*
5LMS|1|A|G|1021
5LMS|1|A|G|1022
5LMS|1|A|G|1023
5LMS|1|A|G|1024
5LMS|1|A|U|1025
5LMS|1|A|G|1026
5LMS|1|A|C|1027
*
5LMS|1|A|G|1034
5LMS|1|A|A|1035
5LMS|1|A|G|1036
5LMS|1|A|C|1037
5LMS|1|A|C|1038
5LMS|1|A|C|1039

Current chains

Chain A

16S rRNA

Nearby chains