J3_5LMU_006

3D structure

PDB id

5LMU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LMU_006 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1293

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

5LMU|1|A|U|943
5LMU|1|A|G|944
5LMU|1|A|G|945
5LMU|1|A|A|946
*
5LMU|1|A|U|1235
5LMU|1|A|A|1236
5LMU|1|A|C|1237
*
5LMU|1|A|G|1337
5LMU|1|A|G|1338
5LMU|1|A|A|1339
5LMU|1|A|A|1340

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain M

30S ribosomal protein S13

Chain V

30S ribosomal protein Thx

Chain Z

Transfer RNA; tRNA