J3_5LMU_012
3D structure
- PDB id
- 5LMU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF3-mRNA-tRNA translation pre-initiation complex, closed form (state-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGC*GGAC*GGAG
- Length
- 11 nucleotides
- Bulged bases
- 5LMU|1|A|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LMU_012 not in the Motif Atlas
- Homologous match to J3_5J7L_010
- Geometric discrepancy: 0.142
- The information below is about J3_5J7L_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.4
- Basepair signature
- cWW-F-cWW-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LMU|1|A|C|1116
5LMU|1|A|G|1117
5LMU|1|A|C|1118
*
5LMU|1|A|G|1155
5LMU|1|A|G|1156
5LMU|1|A|A|1157
5LMU|1|A|C|1158
*
5LMU|1|A|G|1181
5LMU|1|A|G|1182
5LMU|1|A|A|1183
5LMU|1|A|G|1184
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain B
- 30S ribosomal protein S2
- Chain G
- 30S ribosomal protein S7
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain N
- 30S ribosomal protein S14 type Z
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