J3_5LQW_002
3D structure
- PDB id
- 5LQW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- yeast activated spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.8 Å
Loop
- Sequence
- UGCCUUUUGG*CAGUUCC*GAACCGUUUUACA
- Length
- 30 nucleotides
- Bulged bases
- 5LQW|1|2|C|14, 5LQW|1|2|C|15, 5LQW|1|2|U|18, 5LQW|1|2|U|19, 5LQW|1|6|C|66, 5LQW|1|6|C|84, 5LQW|1|6|C|85, 5LQW|1|6|G|86, 5LQW|1|6|U|87, 5LQW|1|6|U|88, 5LQW|1|6|U|89, 5LQW|1|6|U|90, 5LQW|1|6|A|91, 5LQW|1|6|C|92
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LQW|1|2|U|12
5LQW|1|2|G|13
5LQW|1|2|C|14
5LQW|1|2|C|15
5LQW|1|2|U|16
5LQW|1|2|U|17
5LQW|1|2|U|18
5LQW|1|2|U|19
5LQW|1|2|G|20
5LQW|1|2|G|21
*
5LQW|1|6|C|61
5LQW|1|6|A|62
5LQW|1|6|G|63
5LQW|1|6|U|64
5LQW|1|6|U|65
5LQW|1|6|C|66
5LQW|1|6|C|67
*
5LQW|1|6|G|81
5LQW|1|6|A|82
5LQW|1|6|A|83
5LQW|1|6|C|84
5LQW|1|6|C|85
5LQW|1|6|G|86
5LQW|1|6|U|87
5LQW|1|6|U|88
5LQW|1|6|U|89
5LQW|1|6|U|90
5LQW|1|6|A|91
5LQW|1|6|C|92
5LQW|1|6|A|93
Current chains
- Chain 2
- U2 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain 9
- actin pre-mRNA
- Chain A
- Pre-mRNA-splicing factor 8
- Chain D
- Pre-mRNA-splicing factor SLT11
- Chain K
- Pre-mRNA-splicing factor PRP46
- Chain M
- Pre-mRNA-processing protein 45
- Chain R
- Pre-mRNA-splicing factor CLF1
- Chain W
- Pre-mRNA-splicing factor CEF1
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