J3_5LZA_024
3D structure
- PDB id
- 5LZA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UG*UGUUG*CGCAA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZA_024 not in the Motif Atlas
- Homologous match to J3_6CZR_024
- Geometric discrepancy: 0.1736
- The information below is about J3_6CZR_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04260.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LZA|1|a|U|1073
5LZA|1|a|G|1074
*
5LZA|1|a|U|1083
5LZA|1|a|G|1084
5LZA|1|a|U|1085
5LZA|1|a|U|1086
5LZA|1|a|G|1087
*
5LZA|1|a|C|1098
5LZA|1|a|G|1099
5LZA|1|a|C|1100
5LZA|1|a|A|1101
5LZA|1|a|A|1102
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain e
- 30S ribosomal protein S5
- Chain u
- 30S ribosomal protein S21
Coloring options: