J3_5LZA_025

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAU*AGAC*GGUGG

Length

13 nucleotides

Bulged bases

5LZA|1|a|U|1183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZA|1|a|U|1115
5LZA|1|a|U|1116
5LZA|1|a|A|1117
5LZA|1|a|U|1118
*
5LZA|1|a|A|1155
5LZA|1|a|G|1156
5LZA|1|a|A|1157
5LZA|1|a|C|1158
*
5LZA|1|a|G|1181
5LZA|1|a|G|1182
5LZA|1|a|U|1183
5LZA|1|a|G|1184
5LZA|1|a|G|1185

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9

Chain j

30S ribosomal protein S10

Chain n

30S ribosomal protein S14