J3_5LZA_029

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5LZA|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZA_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1021

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZA|1|A|G|297
5LZA|1|A|G|298
5LZA|1|A|A|299
5LZA|1|A|A|300
5LZA|1|A|G|301
*
5LZA|1|A|C|316
5LZA|1|A|G|317
5LZA|1|A|C|318
5LZA|1|A|G|319
5LZA|1|A|A|320
5LZA|1|A|U|321
5LZA|1|A|A|322
5LZA|1|A|C|323
5LZA|1|A|A|324
5LZA|1|A|G|325
*
5LZA|1|A|C|337
5LZA|1|A|G|338
5LZA|1|A|U|339
5LZA|1|A|A|340
5LZA|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24