3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
AC*GAUAAGC*GAUUU
Length
14 nucleotides
Bulged bases
5LZC|1|A|A|74
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZC_002 not in the Motif Atlas
Homologous match to J3_5J7L_037
Geometric discrepancy: 0.1221
The information below is about J3_5J7L_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_35667.2
Basepair signature
cWW-cWW-F-F-F-cWW-F-cWW
Number of instances in this motif group
7

Unit IDs

5LZC|1|A|A|56
5LZC|1|A|C|57
*
5LZC|1|A|G|70
5LZC|1|A|A|71
5LZC|1|A|U|72
5LZC|1|A|A|73
5LZC|1|A|A|74
5LZC|1|A|G|75
5LZC|1|A|C|76
*
5LZC|1|A|G|110
5LZC|1|A|A|111
5LZC|1|A|U|112
5LZC|1|A|U|113
5LZC|1|A|U|114

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23
Chain Y
50S ribosomal protein L29

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