3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CAAG*CUAGUAA*UGAAUACG
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZC_017 not in the Motif Atlas
Homologous match to J3_4LFB_002
Geometric discrepancy: 0.0898
The information below is about J3_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_25303.4
Basepair signature
cWW-F-F-cSS-F-cWW-tWW-F-tWH-F-tHS-cSH-cWW
Number of instances in this motif group
4

Unit IDs

5LZC|1|a|C|936
5LZC|1|a|A|937
5LZC|1|a|A|938
5LZC|1|a|G|939
*
5LZC|1|a|C|1344
5LZC|1|a|U|1345
5LZC|1|a|A|1346
5LZC|1|a|G|1347
5LZC|1|a|U|1348
5LZC|1|a|A|1349
5LZC|1|a|A|1350
*
5LZC|1|a|U|1372
5LZC|1|a|G|1373
5LZC|1|a|A|1374
5LZC|1|a|A|1375
5LZC|1|a|U|1376
5LZC|1|a|A|1377
5LZC|1|a|C|1378
5LZC|1|a|G|1379

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9

Coloring options:


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