3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
UAU*AGACUGC*GAGGAAGGUG
Length
20 nucleotides
Bulged bases
5LZC|1|a|U|1183
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZC_024 not in the Motif Atlas
Homologous match to J3_5J7L_054
Geometric discrepancy: 0.1881
The information below is about J3_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17791.2
Basepair signature
cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
Number of instances in this motif group
2

Unit IDs

5LZC|1|a|U|1116
5LZC|1|a|A|1117
5LZC|1|a|U|1118
*
5LZC|1|a|A|1155
5LZC|1|a|G|1156
5LZC|1|a|A|1157
5LZC|1|a|C|1158
5LZC|1|a|U|1159
5LZC|1|a|G|1160
5LZC|1|a|C|1161
*
5LZC|1|a|G|1175
5LZC|1|a|A|1176
5LZC|1|a|G|1177
5LZC|1|a|G|1178
5LZC|1|a|A|1179
5LZC|1|a|A|1180
5LZC|1|a|G|1181
5LZC|1|a|G|1182
5LZC|1|a|U|1183
5LZC|1|a|G|1184

Current chains

Chain a
16S ribosomal RNA

Nearby chains

Chain b
30S ribosomal protein S2
Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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