3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GGAAG*CGCGAUACAG*CGUAC
Length
20 nucleotides
Bulged bases
5LZC|1|A|U|321
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZC_028 not in the Motif Atlas
Homologous match to J3_5J7L_068
Geometric discrepancy: 0.1302
The information below is about J3_5J7L_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46299.2
Basepair signature
cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW
Number of instances in this motif group
3

Unit IDs

5LZC|1|A|G|297
5LZC|1|A|G|298
5LZC|1|A|A|299
5LZC|1|A|A|300
5LZC|1|A|G|301
*
5LZC|1|A|C|316
5LZC|1|A|G|317
5LZC|1|A|C|318
5LZC|1|A|G|319
5LZC|1|A|A|320
5LZC|1|A|U|321
5LZC|1|A|A|322
5LZC|1|A|C|323
5LZC|1|A|A|324
5LZC|1|A|G|325
*
5LZC|1|A|C|337
5LZC|1|A|G|338
5LZC|1|A|U|339
5LZC|1|A|A|340
5LZC|1|A|C|341

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain E
50S ribosomal protein L4
Chain U
50S ribosomal protein L24

Coloring options:


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