3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
5LZC|1|A|A|2388, 5LZC|1|A|U|2390, 5LZC|1|A|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZC_030 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.0993
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5LZC|1|A|G|2282
5LZC|1|A|C|2283
5LZC|1|A|A|2284
*
5LZC|1|A|U|2384
5LZC|1|A|C|2385
5LZC|1|A|A|2386
5LZC|1|A|U|2387
5LZC|1|A|A|2388
5LZC|1|A|G|2389
5LZC|1|A|U|2390
5LZC|1|A|G|2391
5LZC|1|A|A|2392
5LZC|1|A|U|2393
5LZC|1|A|C|2394
5LZC|1|A|C|2395
*
5LZC|1|A|G|2421
5LZC|1|A|C|2422
5LZC|1|A|U|2423
5LZC|1|A|C|2424
5LZC|1|A|A|2425
5LZC|1|A|A|2426
5LZC|1|A|C|2427

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 1
50S ribosomal protein L33
Chain 3
50S ribosomal protein L35
Chain L
50S ribosomal protein L15
Chain W
50S ribosomal protein L27
Chain w
CCA 3' end of E-site tRNASec (low occupancy)

Coloring options:


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