3D structure

PDB id
5LZD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CUAAU*AGGUUAG*CAUAAG
Length
18 nucleotides
Bulged bases
5LZD|1|A|U|2334
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZD_009 not in the Motif Atlas
Homologous match to J3_5J7L_071
Geometric discrepancy: 0.1845
The information below is about J3_5J7L_071
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44961.1
Basepair signature
cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
Number of instances in this motif group
1

Unit IDs

5LZD|1|A|C|2295
5LZD|1|A|U|2296
5LZD|1|A|A|2297
5LZD|1|A|A|2298
5LZD|1|A|U|2299
*
5LZD|1|A|A|2317
5LZD|1|A|G|2318
5LZD|1|A|G|2319
5LZD|1|A|U|2320
5LZD|1|A|U|2321
5LZD|1|A|A|2322
5LZD|1|A|G|2323
*
5LZD|1|A|C|2332
5LZD|1|A|A|2333
5LZD|1|A|U|2334
5LZD|1|A|A|2335
5LZD|1|A|A|2336
5LZD|1|A|G|2337

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain F
50S ribosomal protein L5
Chain O
50S ribosomal protein L18
Chain W
50S ribosomal protein L27
Chain v
Transfer RNA; tRNA

Coloring options:


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