J3_5LZD_014
3D structure
- PDB id
- 5LZD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZD_014 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.0924
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5LZD|1|a|G|46
5LZD|1|a|C|47
*
5LZD|1|a|G|361
5LZD|1|a|G|362
5LZD|1|a|A|363
5LZD|1|a|A|364
5LZD|1|a|U|365
5LZD|1|a|A|366
5LZD|1|a|U|367
*
5LZD|1|a|A|393
5LZD|1|a|G|394
5LZD|1|a|C|395
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
- Chain z
- Selenocysteine-specific elongation factor
Coloring options: