J3_5LZD_029

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

5LZD|1|A|U|321, 5LZD|1|A|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZD_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0966

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

5LZD|1|A|G|297
5LZD|1|A|G|298
5LZD|1|A|A|299
5LZD|1|A|A|300
5LZD|1|A|G|301
*
5LZD|1|A|C|316
5LZD|1|A|G|317
5LZD|1|A|C|318
5LZD|1|A|G|319
5LZD|1|A|A|320
5LZD|1|A|U|321
5LZD|1|A|A|322
5LZD|1|A|C|323
5LZD|1|A|A|324
5LZD|1|A|G|325
*
5LZD|1|A|C|337
5LZD|1|A|G|338
5LZD|1|A|U|339
5LZD|1|A|A|340
5LZD|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24