J3_5LZS_003

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

UCC*GCCGG*CCACGCGUCCCCCGCG

Length

24 nucleotides

Bulged bases

5LZS|1|5|C|1237, 5LZS|1|5|C|1252, 5LZS|1|5|G|1271, 5LZS|1|5|C|1272

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|5|U|982
5LZS|1|5|C|983
5LZS|1|5|C|984
*
5LZS|1|5|G|1070
5LZS|1|5|C|1071
5LZS|1|5|C|1072
5LZS|1|5|G|1073
5LZS|1|5|G|1074
*
5LZS|1|5|C|1236
5LZS|1|5|C|1237
5LZS|1|5|A|1238
5LZS|1|5|C|1239
5LZS|1|5|G|1244
5LZS|1|5|C|1245
5LZS|1|5|G|1246
5LZS|1|5|U|1247
5LZS|1|5|C|1248
5LZS|1|5|C|1249
5LZS|1|5|C|1250
5LZS|1|5|C|1251
5LZS|1|5|C|1252
5LZS|1|5|G|1271
5LZS|1|5|C|1272
5LZS|1|5|G|1273

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

uL4

Chain E

60S ribosomal protein L6

Chain F

uL30

Chain b

eL29