J3_5LZS_041

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

5LZS|1|5|U|4882, 5LZS|1|5|A|4938, 5LZS|1|5|C|4940, 5LZS|1|5|A|4943, 5LZS|1|5|C|4944, 5LZS|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|5|C|4749
5LZS|1|5|G|4750
5LZS|1|5|G|4751
5LZS|1|5|U|4752
5LZS|1|5|U|4753
5LZS|1|5|G|4754
*
5LZS|1|5|C|4879
5LZS|1|5|C|4880
5LZS|1|5|U|4881
5LZS|1|5|U|4882
5LZS|1|5|C|4883
*
5LZS|1|5|G|4936
5LZS|1|5|C|4937
5LZS|1|5|A|4938
5LZS|1|5|C|4939
5LZS|1|5|C|4940
5LZS|1|5|G|4941
5LZS|1|5|C|4942
5LZS|1|5|A|4943
5LZS|1|5|C|4944
5LZS|1|5|G|4945
5LZS|1|5|U|4946
5LZS|1|5|U|4947
5LZS|1|5|C|4948
5LZS|1|5|G|4949
5LZS|1|5|U|4950
5LZS|1|5|G|4951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain M

eL14

Chain O

uL13

Chain f

eL33