J3_5LZS_046

3D structure

PDB id

5LZS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal elongation complex with aminoacyl-tRNA, eEF1A, and didemnin B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

GUAGUGUAGCGGUUAUCACGU*AAGGUCC*GC

Length

30 nucleotides

Bulged bases

5LZS|1|ii|G|18, 5LZS|1|ii|G|19, 5LZS|1|ii|U|20, 5LZS|1|ii|U|48

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZS|1|ii|G|7
5LZS|1|ii|U|8
5LZS|1|ii|A|9
5LZS|1|ii|G|10
5LZS|1|ii|U|11
5LZS|1|ii|G|12
5LZS|1|ii|U|13
5LZS|1|ii|A|14
5LZS|1|ii|G|15
5LZS|1|ii|C|16
5LZS|1|ii|G|18
5LZS|1|ii|G|19
5LZS|1|ii|U|20
5LZS|1|ii|U|21
5LZS|1|ii|A|22
5LZS|1|ii|U|23
5LZS|1|ii|C|24
5LZS|1|ii|A|25
5LZS|1|ii|C|26
5LZS|1|ii|G|27
5LZS|1|ii|U|28
*
5LZS|1|ii|A|44
5LZS|1|ii|A|45
5LZS|1|ii|G|46
5LZS|1|ii|G|47
5LZS|1|ii|U|48
5LZS|1|ii|C|49
5LZS|1|ii|C|50
*
5LZS|1|ii|G|66
5LZS|1|ii|C|67

Current chains

Chain ii

tRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain XX

uS12

Chain ee

eS30

Chain jj

Elongation factor 1-alpha 1