3D structure

PDB id
5LZT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.65 Å

Loop

Sequence
AUUC*GGACCAGAG*CAUUU
Length
18 nucleotides
Bulged bases
5LZT|1|9|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZT_022 not in the Motif Atlas
Homologous match to J3_4V88_033
Geometric discrepancy: 0.1011
The information below is about J3_4V88_033
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_38616.1
Basepair signature
cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
Number of instances in this motif group
1

Unit IDs

5LZT|1|9|A|938
5LZT|1|9|U|939
5LZT|1|9|U|940
5LZT|1|9|C|941
*
5LZT|1|9|G|985
5LZT|1|9|G|986
5LZT|1|9|A|987
5LZT|1|9|C|988
5LZT|1|9|C|989
5LZT|1|9|A|990
5LZT|1|9|G|991
5LZT|1|9|A|992
5LZT|1|9|G|993
*
5LZT|1|9|C|1000
5LZT|1|9|A|1001
5LZT|1|9|U|1002
5LZT|1|9|U|1003
5LZT|1|9|U|1004

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain A
uL2
Chain BB
eS1
Chain NN
uS15
Chain OO
uS11
Chain aa
eS26
Chain p
eL43

Coloring options:


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