J3_5LZT_041

3D structure

PDB id

5LZT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with eRF1 and eRF3.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.65 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

5LZT|1|5|U|4882, 5LZT|1|5|A|4938, 5LZT|1|5|C|4940, 5LZT|1|5|A|4943, 5LZT|1|5|C|4944, 5LZT|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZT|1|5|C|4749
5LZT|1|5|G|4750
5LZT|1|5|G|4751
5LZT|1|5|U|4752
5LZT|1|5|U|4753
5LZT|1|5|G|4754
*
5LZT|1|5|C|4879
5LZT|1|5|C|4880
5LZT|1|5|U|4881
5LZT|1|5|U|4882
5LZT|1|5|C|4883
*
5LZT|1|5|G|4936
5LZT|1|5|C|4937
5LZT|1|5|A|4938
5LZT|1|5|C|4939
5LZT|1|5|C|4940
5LZT|1|5|G|4941
5LZT|1|5|C|4942
5LZT|1|5|A|4943
5LZT|1|5|C|4944
5LZT|1|5|G|4945
5LZT|1|5|U|4946
5LZT|1|5|U|4947
5LZT|1|5|C|4948
5LZT|1|5|G|4949
5LZT|1|5|U|4950
5LZT|1|5|G|4951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33