3D structure

PDB id
5LZU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the mammalian ribosomal termination complex with accommodated eRF1
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
UCUUAG*CGAGAC*GCAAUA
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_5LZU_029 not in the Motif Atlas
Homologous match to J3_8P9A_080
Geometric discrepancy: 0.3682
The information below is about J3_8P9A_080
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_99563.1
Basepair signature
cWW-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
Number of instances in this motif group
1

Unit IDs

5LZU|1|9|U|1340
5LZU|1|9|C|1341
5LZU|1|9|U|1342
5LZU|1|9|U|1343
5LZU|1|9|A|1344
5LZU|1|9|G|1345
*
5LZU|1|9|C|1384
5LZU|1|9|G|1385
5LZU|1|9|A|1386
5LZU|1|9|G|1387
5LZU|1|9|A|1388
5LZU|1|9|C|1389
*
5LZU|1|9|G|1481
5LZU|1|9|C|1482
5LZU|1|9|A|1483
5LZU|1|9|A|1484
5LZU|1|9|U|1485
5LZU|1|9|A|1486

Current chains

Chain 9
18S ribosomal RNA

Nearby chains

Chain CC
uS5
Chain DD
uS3
Chain QQ
uS9
Chain RR
eS17
Chain UU
uS10
Chain dd
uS14

Coloring options:


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