J3_5LZU_029

3D structure

PDB id

5LZU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian ribosomal termination complex with accommodated eRF1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_5LZU_029 not in the Motif Atlas

Homologous match to J3_8P9A_080

Geometric discrepancy: 0.3682

The information below is about J3_8P9A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17077.1

Basepair signature

cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5LZU|1|9|U|1340
5LZU|1|9|C|1341
5LZU|1|9|U|1342
5LZU|1|9|U|1343
5LZU|1|9|A|1344
5LZU|1|9|G|1345
*
5LZU|1|9|C|1384
5LZU|1|9|G|1385
5LZU|1|9|A|1386
5LZU|1|9|G|1387
5LZU|1|9|A|1388
5LZU|1|9|C|1389
*
5LZU|1|9|G|1481
5LZU|1|9|C|1482
5LZU|1|9|A|1483
5LZU|1|9|A|1484
5LZU|1|9|U|1485
5LZU|1|9|A|1486

Current chains

Chain 9

18S ribosomal RNA

Nearby chains

Chain CC

uS5

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain dd

uS14