J3_5LZW_030
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZW_030 not in the Motif Atlas
- Homologous match to J3_8P9A_080
- Geometric discrepancy: 0.3657
- The information below is about J3_8P9A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17077.1
- Basepair signature
- cWW-F-F-F-F-F-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5LZW|1|9|U|1340
5LZW|1|9|C|1341
5LZW|1|9|U|1342
5LZW|1|9|U|1343
5LZW|1|9|A|1344
5LZW|1|9|G|1345
*
5LZW|1|9|C|1384
5LZW|1|9|G|1385
5LZW|1|9|A|1386
5LZW|1|9|G|1387
5LZW|1|9|A|1388
5LZW|1|9|C|1389
*
5LZW|1|9|G|1481
5LZW|1|9|C|1482
5LZW|1|9|A|1483
5LZW|1|9|A|1484
5LZW|1|9|U|1485
5LZW|1|9|A|1486
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain CC
- uS5
- Chain DD
- uS3
- Chain QQ
- uS9
- Chain RR
- eS17
- Chain UU
- uS10
- Chain dd
- uS14
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