J3_5LZW_043

3D structure

PDB id

5LZW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CGGUUG*CCUUC*GCACCGCACGUUCGUG

Length

27 nucleotides

Bulged bases

5LZW|1|5|U|4882, 5LZW|1|5|A|4938, 5LZW|1|5|C|4940, 5LZW|1|5|A|4943, 5LZW|1|5|C|4944, 5LZW|1|5|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LZW|1|5|C|4749
5LZW|1|5|G|4750
5LZW|1|5|G|4751
5LZW|1|5|U|4752
5LZW|1|5|U|4753
5LZW|1|5|G|4754
*
5LZW|1|5|C|4879
5LZW|1|5|C|4880
5LZW|1|5|U|4881
5LZW|1|5|U|4882
5LZW|1|5|C|4883
*
5LZW|1|5|G|4936
5LZW|1|5|C|4937
5LZW|1|5|A|4938
5LZW|1|5|C|4939
5LZW|1|5|C|4940
5LZW|1|5|G|4941
5LZW|1|5|C|4942
5LZW|1|5|A|4943
5LZW|1|5|C|4944
5LZW|1|5|G|4945
5LZW|1|5|U|4946
5LZW|1|5|U|4947
5LZW|1|5|C|4948
5LZW|1|5|G|4949
5LZW|1|5|U|4950
5LZW|1|5|G|4951

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

eL6

Chain M

eL14

Chain O

uL13

Chain f

eL33