J3_5LZW_049
3D structure
- PDB id
- 5LZW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the mammalian rescue complex with Pelota and Hbs1l assembled on a truncated mRNA.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- UGG*UAAGAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 5LZW|1|9|G|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_5LZW_049 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.1234
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
5LZW|1|9|U|682
5LZW|1|9|G|683
5LZW|1|9|G|684
*
5LZW|1|9|U|918
5LZW|1|9|A|919
5LZW|1|9|A|920
5LZW|1|9|G|921
5LZW|1|9|A|922
5LZW|1|9|G|923
*
5LZW|1|9|C|1019
5LZW|1|9|A|1020
5LZW|1|9|U|1021
5LZW|1|9|U|1022
5LZW|1|9|A|1023
Current chains
- Chain 9
- 18S ribosomal RNA
Nearby chains
- Chain HH
- eS7
- Chain LL
- uS17
- Chain NN
- uS15
- Chain WW
- uS8
- Chain XX
- uS12
- Chain bb
- eS27
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